Skip to main content
Colorful coral reef with tropical fish
Adventure

Marine Biodiversity Tour: Snorkeling & Diving Siquijor

Discover Siquijor's underwater world - marine sanctuaries, coral reefs, and dive sites. Complete guide to snorkeling and diving on the island.

S
Siquijor.xyz Editorial Team
8 min read Easy Half day to full day

Beneath Siquijor’s crystal-clear waters lies a vibrant underwater world. Thanks to marine sanctuaries and conservation efforts, the island offers excellent snorkeling and diving for all skill levels. Here’s your guide to exploring Siquijor’s marine biodiversity.

Overview

Siquijor’s marine environment includes:

  • Marine sanctuaries — Protected reef areas with thriving ecosystems
  • Coral gardens — Accessible snorkeling sites
  • Dive sites — Walls, slopes, and deep sites for certified divers
  • Shore snorkeling — Walk-in access at several beaches

Top Snorkeling Spots

Tubod Marine Sanctuary

Tubod Marine Sanctuary

4.7

Siquijor's premier snorkeling site with healthy reef and abundant fish

6:00 AM - 5:30 PM PHP 50 (sanctuary fee) + PHP 100-150 (gear rental) Open in Maps

The best snorkeling on the island. Located in front of Coco Grove Resort in San Juan.

What You’ll See:

  • Healthy hard and soft corals
  • Schools of tropical fish
  • Clownfish in anemones
  • Sea urchins, starfish
  • Occasional sea turtles

Access:

  • Walk in from the beach
  • Shallow to moderate depth
  • Suitable for beginners

Tips:

  • Go early morning for best visibility
  • Avoid touching coral
  • Stay within sanctuary boundaries
  • Respect the no-fishing zone

Pro Tip

Non-guests can snorkel at Tubod by paying the sanctuary fee. You don’t need to stay at Coco Grove to access this world-class site.

Paliton Beach Reef

Paliton Beach

4.5

Scenic beach with fringing reef for snorkeling

Open 24 hours Free (some resorts may charge access) Open in Maps

The famous photo-op beach also offers decent snorkeling along its fringing reef.

What You’ll See:

  • Smaller reef fish
  • Coral formations
  • Seagrass areas

Note: Not as rich as Tubod, but convenient if you’re already at the beach.

Sandugan Marine Sanctuary

Sandugan Marine Sanctuary

4.2

Marine sanctuary near Larena with good snorkeling

Daylight hours PHP 20-50 Open in Maps

Near Larena Port, this less-visited sanctuary offers:

  • Quieter experience
  • Decent coral coverage
  • Local fishing community
  • Authentic atmosphere

Salagdoong Beach Snorkeling

The famous cliff-jumping beach also has snorkeling potential:

  • Rocky reef areas
  • Clear waters
  • Combine with cliff jumping
  • More adventurous access

Diving in Siquijor

Dive Sites Overview

SiteDepthFeaturesLevel
Sandugan5-25mCoral slopes, reef fishAll levels
Tubod5-18mCoral gardens, macroBeginner-friendly
Larena Point10-30mWall dive, pelagicsIntermediate
Apo Island5-40mTurtles, sharksAll levels

What You Might See

Common Sightings:

  • Reef fish (parrotfish, angelfish, butterflyfish)
  • Clownfish and anemones
  • Moray eels
  • Nudibranchs (macro life)
  • Sea turtles (especially at Apo Island)

Occasional Sightings:

  • Reef sharks
  • Eagle rays
  • Octopus
  • Cuttlefish
  • Seahorses

Dive Operators

Several shops offer PADI courses and guided dives:

Services Available:

  • Discover Scuba (intro dive): PHP 2,500-3,500
  • Fun dives (certified): PHP 1,500-2,500 per dive
  • PADI Open Water course: PHP 18,000-22,000
  • Advanced Open Water: PHP 15,000-18,000
  • Equipment rental included in most packages

Insider Knowledge

Ask about Apo Island day trips. While technically part of Negros Oriental, Apo Island is just a 30-minute boat ride from Siquijor and offers world-class diving with almost guaranteed turtle sightings.


Apo Island Day Trip

Although not part of Siquijor, Apo Island is the region’s premier dive and snorkel destination.

Apo Island

4.9

World-renowned marine sanctuary with turtles and pristine reefs

Day trips: 7:00 AM - 4:00 PM PHP 100 (marine fee) + boat transfer Open in Maps

Why Go

  • Sea turtles — Almost 100% sighting rate
  • Pristine reef — Excellent marine biodiversity
  • Clear waters — Visibility often 20+ meters
  • Less crowded — When accessed from Siquijor

Day Trip Logistics

From Siquijor:

  • Boat from Dumaguete side (faster) or arranged from Siquijor
  • Full-day excursion: 6-8 hours
  • Cost: PHP 2,500-4,000 per person (includes boat, guide, fees)

What’s Included:

  • Boat transportation
  • Snorkel gear
  • Marine sanctuary fee
  • Guide
  • Lunch (sometimes)

Good to Know

Apo Island trips are weather-dependent. Rough seas during monsoon season (June-October) may cancel trips. Book with flexible dates if visiting during this period.


Marine Conservation

Siquijor’s reefs thrive because of conservation efforts. Help protect them:

Do

  • Use reef-safe sunscreen only
  • Look but don’t touch
  • Stay buoyant (don’t stand on coral)
  • Follow guide instructions
  • Support marine sanctuaries with fees

Don’t

  • Touch, stand on, or break coral
  • Chase or touch marine life
  • Collect shells, coral, or anything
  • Feed fish
  • Use gloves (tempts touching)

Reef-Safe Sunscreen

Regular sunscreen damages coral. Look for products:

  • Free of oxybenzone
  • Free of octinoxate
  • Mineral-based (zinc oxide, titanium dioxide)

Some available in Siquijor shops, but bring from home for certainty.


Practical Information

Best Conditions

Season:

  • Best: November to May (dry season)
  • Good: October and June (shoulder)
  • Challenging: July-September (monsoon)

Time of Day:

  • Morning: Calmest water, best visibility
  • Afternoon: Possible wind and waves

Tides:

  • Check tide charts for specific sites
  • Some sites better at high tide
  • Sandugan can be shallow at low tide

Gear Rental

Available at major snorkel sites:

ItemRental Cost
Mask + snorkelPHP 100-150
FinsPHP 50-100
Full setPHP 150-200
Life jacketPHP 50-100
Underwater cameraPHP 500+

Note: Quality varies. Bring your own if possible, especially masks (fit is personal).

Safety

  • Never snorkel alone
  • Stay within your abilities
  • Watch for boats and jet skis
  • Be aware of currents
  • Use life jacket if not a strong swimmer
  • Stay hydrated

Marine Tour Itinerary

Half-Day Snorkel Tour

TimeActivity
8:00 AMDepart accommodation
8:30 AMArrive Tubod Marine Sanctuary
9:00-11:00 AMSnorkeling (2 hours)
11:30 AMLunch at Coco Grove or nearby
12:30 PMReturn

Cost: PHP 300-500 (including transport, fees, gear)

Full-Day Marine Experience

TimeActivity
7:00 AMDepart for Apo Island
9:00 AMArrive, first snorkel session
11:00 AMBeach break, lunch
1:00 PMSecond snorkel session
3:00 PMDepart Apo Island
5:00 PMReturn to Siquijor

Cost: PHP 2,500-4,000 (complete package)

Diving Day

TimeActivity
8:00 AMMeet at dive shop
8:30 AMFirst dive (Sandugan or Tubod)
10:30 AMSurface interval, snacks
11:30 AMSecond dive
1:00 PMReturn, debrief

Cost: PHP 3,000-4,500 (two-tank dive)


For Beginners

First-Time Snorkelers

  • Start at Tubod (calm, shallow, protected)
  • Rent life jacket if not confident
  • Practice in shallow water first
  • Don’t rush—enjoy at your pace
  • Ask guides for tips

Discover Scuba

Never dived before? Try an intro experience:

  • Pool/shallow water training
  • Guided underwater experience
  • PADI certification not required
  • Typical duration: 3-4 hours
  • Cost: PHP 2,500-3,500

Budget Breakdown

Snorkeling Only

ItemCost
Tubod Sanctuary feePHP 50
Gear rentalPHP 150
Transport (tricycle)PHP 100
TotalPHP 300

Apo Island Day Trip

ItemCost
Boat transferPHP 1,500-2,000
Marine sanctuary feePHP 100
GuideIncluded
GearIncluded
LunchPHP 200-500
TotalPHP 2,500-4,000

Certified Diving

ItemCost
Two-tank divePHP 3,000-4,500
All gear includedYes
Boat/guide includedYes

Save Money

Bring your own mask and snorkel—they’re light to pack and guarantee a good fit. Rental masks often leak or fog.


Final Thoughts

Siquijor may not have the diving reputation of Moalboal or Malapascua, but its marine sanctuaries offer accessible, rewarding underwater experiences. The advantage is intimacy—you won’t fight crowds at Tubod, and the reef has recovered beautifully under protection.

For serious divers, make the day trip to Apo Island. Swimming with sea turtles in crystal-clear water is a memory that lasts.

Whether you’re dipping your mask in for the first time or logging another dive, Siquijor’s underwater world rewards exploration. The same mystical energy that defines the island above water somehow permeates below—a quiet, colorful magic where time slows and the real world fades away.

Grab your mask. The reef is waiting.

Frequently Asked Questions

Where is the best snorkeling in Siquijor?
Tubod Marine Sanctuary (in front of Coco Grove Resort) offers the best snorkeling with healthy coral and abundant fish life, accessible from shore.
Can I learn to dive in Siquijor?
Yes, several dive shops offer PADI certification courses. A 3-day Open Water course costs around PHP 18,000-22,000.
Do I need to bring my own snorkel gear?
Gear is available for rent at most marine sanctuaries and resorts. Basic mask and snorkel rent for PHP 100-200.
What marine life can I see?
Common sightings include clownfish, parrotfish, sea turtles, reef sharks (at deeper sites), colorful coral, and various tropical species.
SE

Siquijor.xyz Editorial Team

Local experts sharing authentic Siquijor experiences

Related Experiences